Treebanking Finnish

Proceedings of the Ninth International Workshop on Treebanks and Linguistic Theories. Editors: Markus Dickinson, Kaili Müürisep and Marco Passarotti. NEALT Proceedings Series, Vol. 9 (2010), 79-90. © 2010 The editors and contributors. Published by Northern European Association for Language Technology (NEALT) http://omilia.uio.no/nealt . Electronically published at Tartu University Library (Estonia) http://hdl.handle.net/10062/15891

The Association Between Epigenetic Clocks and Physical Functioning in Older Women: A 3-Year Follow-up

Epigenetic clocks are composite markers developed to predict chronological age or mortality risk from DNA methylation (DNAm) data. The present study investigated the associations between 4 epigenetic clocks (Horvath’s and Hannum’s DNAmAge and DNAm GrimAge and PhenoAge) and physical functioning during a 3-year follow-up.We studied 63- to 76-year-old women (N = 413) from the Finnish Twin Study on Aging. DNAm was measured from blood samples at baseline. Age acceleration (AgeAccel), that is, discrepancy between chronological age and DNAm age, was determined as residuals from linear model. Physical functioning was assessed under standardized laboratory conditions at baseline and at follow-up. A cross-sectional analysis was performed with path models, and a longitudinal analysis was conducted with repeated measures linear models. A nonrandom missing data analysis was performed.In comparison to the other clocks, GrimAgeAccel was more strongly associated with physical functioning. At baseline, GrimAgeAccel was associated with lower performance in the Timed Up and Go (TUG) test and the 6-minute walk test. At follow-up, significant associations were observed between GrimAgeAccel and lowered performance in the TUG, 6-minute and 10-m walk tests, and knee extension and ankle plantar flexion strength tests.The DNAm GrimAge, a novel estimate of biological aging, associated with decline in physical functioning over the 3-year follow-up in older women. However, associations between chronological age and physical function phenotypes followed similar pattern. Current epigenetic clocks do not provide strong benefits in predicting the decline of physical functioning at least during a rather short follow-up period and restricted age range.Peer reviewe

Sustainable High Yield Route to Cellulose Nanocrystals from Bacterial Cellulose

HCl gas hydrolysis of a bacterial cellulose (BC) aerogel followed by 2,2,6,6-tetramethylpiperidine-1-oxyl radical-mediated oxidation was used to produce hydrolyzed BC with carboxylate groups, which subsequently disintegrated into a stable dispersion of cellulose nanocrystals (CNCs). The degree of polymerization was successfully reduced from 2160 to 220 with a CNC yield of >80%.Peer reviewe

Pain process of patients with cardiac surgery — Semantic annotation of electronic patient record data

Aims and objectives: To describe and compare the pain process of the patients’ with cardiac surgery through nurses’ and physicians’ documentations in the electronic patient records.Background: Postoperative pain assessment and management should be documented regularly, to ensure optimal pain care process for patients. Despite availability of evidence‐based guidelines, pain assessment and documentation remain inadequate.Design: A retrospective patients’ record review.Methods: The original data consisted of the electronic patient records of 26,922 patients with a diagnosed heart disease. A total of 1,818 care episodes of patients with cardiac surgery were selected from the data. We used random sampling to obtain 280 care episodes for annotation. These 280 care episodes contained 2,156 physician reports and 1,327 days of nursing notes. We developed an annotation manual and schema, and then, we manually conducted semantic annotation on care episodes, using the Brat annotation tool. We analysed the annotation units using thematic analysis. Consolidated criteria for reporting qualitative research guideline was followed in reporting where appropriate in this study design.Results: We discovered expressions of six different aspects of pain process: (a) cause, (b) situation, (c) features, (d) consequences, (e) actions and (f) outcomes. We determined that five of the aspects existed chronologically. However, the features of pain were simultaneously existing. They indicated the location, quality, intensity, and temporality of the pain and they were present in every phase of the patient’s pain process. Cardiac and postoperative pain documentations differed from each other in used expressions and in the quantity and quality of descriptions.Conclusion: We could construct a comprehensive pain process of the patients with cardiac surgery from several electronic patient records. The challenge remains how to support systematic documentation in each patient.Relevance to clinical practice: The study provides knowledge and guidance of pain process aspects that can be used to achieve an effective pain assessment and more comprehensive documentation.<br /

Occurrence of two-year cyclicity, "saw-blade fluctuation", in vendace populations in Finland

The tendency towards two-year cyclicity is considered typical of many Fennoscandian vendace populations, especially in fluctuation of recruitment, based on time series of individual lakes. We used two robust indicators to identify and quantify two-year cycles in vendace population proxy time series at different life-stages - spawning stock biomass (SB), density of newly hatched larvae (LD) and recruitment (REC) - from 22 Finnish lakes. Then we applied Fisher's meta-analytical test to assess the adequacy of the evidence to support the hypothesis that vendace population dynamics include two-year cyclicity. The results supported this hypothesis for REC but not for SB or LD. Yet. the indicators and test are conservative and time-series of SB and LD are shorter than those for REC. The appearance of cycles in REC is associated with high post-recruitment mortality, consequently practically only one spawning per cohort. Cycles may be typical for the recovery period from low abundance period also. Still, some populations with moderate post-REC mortality and non-cyclic SB abundance exhibited cycles in REC. Such dynamics presuppose the existence of more complex regulation based on the interaction of different life stages